PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK27436.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family Trihelix
Protein Properties Length: 817aa    MW: 92660.5 Da    PI: 6.5907
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK27436.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix521.9e-16169246285
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                W+++evlaL+ +r+ me+++ +       We+vs+k++e gf+rs+++Ckek+e+ ++++  ++++++   +  s+ c  +++l
  PK27436.1 169 WSEDEVLALLGIRSTMENWFPDF-----TWEHVSRKLAELGFKRSAEKCKEKFEEESQYFTTTNNNSNCS-KSYSRLCNQLSEL 246
                ********************998.....9*******************************9999888763.5555566655555 PP

2trihelix926.3e-29603706186
   trihelix   1 rWtkqevlaLiearremeerlrrgk...................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                rW+++evlaLi++r ++ +++ ++                     k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpy
  PK27436.1 603 RWPRDEVLALINLRCNLYSTVTTATatgessstsdhhhhhhhhnHKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDVNKKR-SVDSRTCPY 701
                8**************66666555433344455555666666666*********************************************8.78889**** PP

   trihelix  82 fdqle 86 
                f+ql 
  PK27436.1 702 FHQLS 706
                ***96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.2E-11167235No hitNo description
PROSITE profilePS500906.098168220IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.5E-4601680IPR009057Homeodomain-like
PfamPF138375.9E-18602707No hitNo description
CDDcd122031.41E-23602686No hitNo description
PROSITE profilePS500905.877603679IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 817 aa     Download sequence    Send to blast
MFNGGVPDQL HQFIASSRPN SVAALLPLST TTTTNTTTTT TTPFSSSNSS IDHIIHANYT  60
TTITPNHAHE SHHHHHHNPF HHHQLLPPLH HPNNFLHPML HHVQHPKLIN HHLHKQIDEQ  120
ATASAASGPN NLVSHVDLEM MQTHTPIPEL IPTVDHHHHH HQLHLQQPWS EDEVLALLGI  180
RSTMENWFPD FTWEHVSRKL AELGFKRSAE KCKEKFEEES QYFTTTNNNS NCSKSYSRLC  240
NQLSELEELY HGQNNQGGHH QNQNHHNGTT AGDEKDHQSV EENPSDELEV MKRNGNNRQG  300
LELEELEISD STRNETVLLL GGNSKEYYSD EMTEKVVVSA VGGVEISKSG INNNNENNNN  360
KKKKKKKRKR SSSLQQHDDD GDGDDDGDGD GDDDGDDKKN HNSNKMMKFD MFKGFCEEIV  420
KKMMAQQEEM HNKLLEDMVK RDEEKVAIEE AWKKQEMDRM NKELEIMAHE QALAGDRQAS  480
IIDFLNKVTQ LTKLDNNNIS NNNNKDNVVS LTSSSSSSLN IPPPPPSNPN PTITHLEKNQ  540
TNHHHPHYDD KKPSSSSSNK DIVVVLSSST ATTPTNKPVA TSSAIKTVQN PISINDKEDL  600
GKRWPRDEVL ALINLRCNLY STVTTATATG ESSSTSDHHH HHHHHNHKAP LWERISQGML  660
ELGYKRSAKR CKEKWENINK YFRKTKDVNK KRSVDSRTCP YFHQLSSLYN KGSSSTTSTT  720
LVSTSFQQAQ NNNNINDNNN HDHRQDDHII ITMNNNGDHH SPITTTTTTP ADHHHHHNHG  780
EMSSLSDNNN IIIRDDHHQE EEEAVVVVAS TAFDFEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1361369KKKKKKRKR
2363368KKKKRK
3363369KKKKRKR
4365370KKRKRS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.12e-40Trihelix family protein